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The PCR inserts were TA cloned into pCR2. A second amino acid, or non-target amino acid, is an amino acid that is capable of reacting with a labeling compound used to label a target amino acid of a protein under reaction condition used to conjugate the labeling compound to a target amino acid, but whose conjugation with a labeling compound is not desired. 14 ml 60% TCA is added to 30 ml protein solution obtained from the Ni-NTA purification add and mixed well. Sharp Pre-Stained Standard Protein Blend Preparation. In preferred embodiments, all of the protein pre-labeled standards of the set can migrate within 5% of the migration of the same proteins in unlabeled form. Sequences depleted in lysine can be further selected based on low frequency of other potential non-target amino acids, such as, but not limited to, histidine or tryptophan. A naturally-occurring protein can be any naturally-occurring protein. The bottle was purged with argon and labeled with the following name to distinguish it from the starting material: "Reactive Orange 16 Vinyl Sulfone". DETAILED DESCRIPTION OF THE INVENTION. Novex sharp prestained protein standard curve. The invention provides molecular weight standard sets in which two or more selectively labeled proteins of different molecular weights comprise different numbers of copies of an amino acid sequence having homology to an amino acid sequence of a naturally-occurring protein. The present invention provides pre-labeled protein standard sets that when electrophoresed give sharp bands that have migration distances consistent with the migration distances of the proteins of the standard set electrophoresed in unlabeled form. In the context of the present application, a "target amino acid" or "an amino acid targeted for labeling" is an amino acid that is used for the covalent attachment of a label, such as a dye, to a peptide or protein.

Novex Sharp Prestained Protein Standard Dual

Different proteins of a pre-labeled protein standard set can be labeled on different amino acids. Highly Resolving Electrophoretic Separation of Pre-Labeled Protein Standards. The concentration of insulin was determined by measuring the absorbance at 280 nm after zeroing with a solution of 50 mM Tris, 1% SDS pH=8.

High-intensity, 3-colour molecular weight determination. The mutation of codons can be to any non-target codon and need not be restricted to conservative mutation. 20 kDa BenchMark™ Protein Standard. After the addition of sodium nitrite was complete the ice bath was removed and the temperature was allowed to rise to −20° C. The solution became clear as the diazonium salt formed. Sharp Molecular Weight Marker Expression Plasmids: 110, 160, and 260 kd Proteins. Blue Protein Standard, Broad Range, New England Biolabs. 13 depicts the reaction scheme for generating the vinyl sulfone form of Orange 16. Novex sharp prestained protein standard dual. Alkylation is performed at a protein concentration of 1 mg/ml. The protein contained 73 cysteines and 19 lysine amino acids.

Novex Sharp Prestained Protein Standard Curve

In certain illustrative examples, the non-target amino acid is capable of reacting with the label more efficiently than any other amino acid in the protein, except for the first amino acid. 5 ml BugBuster® HT protein extraction reagent (Novagen, Madison, Wis., USA) including 25 μl of 5 mg/ml lysozyme are added to the cell paste. Novex sharp prestained protein standard range. Two or more proteins "have electrophoretic separation characteristics that are substantially the same" or "do not differ substantially in their migration in acrylamide electrophoresis gels" when the molecular weights calculated for the two or more referenced proteins by their migration distance on a gel, such as a polyacrylamide gel, are within 10%, preferably within 7% or within 5%. The protein that is selectively labeled can be a naturally-occurring protein that lacks a non-target amino acid and that is isolated from cells, tissue, organisms, biological samples, or media. In some preferred embodiments, the method further comprises determining the molecular weight of the one or more sample proteins. The sodium nitrite solution was added dropwise to the mixture and the solid in the flask began to dissolve with a yellowish/green color developing in the solution.

A selectively labeled protein depleted in a first amino acid can also be produced using recombinant methods, in which a nucleic acid sequence that encodes an amino acid sequence having homology to the sequence of a naturally-occurring protein is used to produce the protein in cells or in an in vitro synthesis system. This is largely due to the difficulties in uniformly labeling a particular protein standard. In some preferred methods of labeling cysteine residues, the reducing agent is beta-mercaptoethanol, dithiothreitol, TCEP, or TBP. 50 μl of 1M iodoacetamide was added, and the sample was vortexed for 3-5 seconds and then incubated for 40-60 minutes at room temperature in the dark. Novex™ Sharp Pre-stained Protein Standard. The samples were incubated for 10 minutes at 70° C. 10 μl of each sample were loaded on a 4-12% NuPAGE® gel and run with 1×MES running buffer at 200V for 37 minutes. In some preferred embodiments of the invention, a protein standard that is depleted in a non-target amino acid has no residues of a non-target amino acid (lacks a non-target amino acid). In some preferred embodiments, the two or more labeled proteins are selectively labeled on a first amino acid and comprise one or more copies of an amino acid sequence of a naturally-occurring protein or having at least 70% or at least 80% identical to at least 20, at least 30, at least 40, or at least 50 contiguous amino acids of a naturally-occurring protein. The second amino acid is preferably a non-target amino acid that reacts with a labeling compound used to label the selectively labeled protein. The term label can also refer to a "tag" or hapten that can bind selectively to a conjugated molecule such that the conjugated molecule, when added subsequently along with a substrate, is used to generate a detectable signal.

Novex Sharp Prestained Protein Standard Gold

Use at an assay dependent concentration. In another embodiment, the method includes: providing a pre-labeled protein standard set to a customer, in which the pre-labeled protein standard set comprises twelve labeled proteins, in which at least five of the twelve labeled proteins are labeled on cysteine and lack lysine residues, and in which the electrophoretic migration of each of the twelve labeled protein standards is the same as the electrophoretic migration of the same protein standard in unlabeled form on the same acrylamide gel. Lysine codons can be mutated to any nonlysine codons. For example, both glutamate and aspartate can be target amino acids. The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user. Codons of a target amino acid can also be mutated to change the third nucleotide of the codon while retaining its amino acid specificity (through "wobble") to reduce the chance of recombination in the nucleic acid construct. The method includes: reducing cysteines of a protein that lacks lysine residues and adding a labeling compound to the protein under conditions that allow conjugation of the dye with cysteine. Examples of nucleotide-disulfide oxidoreductases include lipoamide dehydrogenase, glutathione reductase, or thioredoxin. A positive clone was identified by colony PCR using the 50. 3) are especially suitable for reaction with succinimidyl esters, phosphate buffers (pH about 7.

A protein depleted in a non-target amino acid has fewer than one residue of a non-target amino acid per 10 kDa. In some preferred embodiments of a pre-labeled protein standard set provided in a kit, at least five proteins of the set that are selectively labeled on a first amino acid have between three and five residues of a first amino acid, such as between 3. Insulin b-Chain Purification. Supplier: Invitrogen™ LC5800. The solid dye was weighted and the yield was calculated. Fractions were collected (monitored at 280 nm using UV detector). 891 kDa protein having a truncated thioredoxin linked to two copies of a 5 kDa fragment of the Dead-box protein, (Invitrogen Corp., Carlsbad, Calif. 6, 703, 484) was labeled for use as the 20 kDa standard of the pre-labeled marker set.

Novex Sharp Prestained Protein Standard Range

Bound a-chain was eluted with 8M urea in 50 mM Na-acetate, 500 mM NaCl pH=5. In selecting one or more target amino acids and minimizing labeling of one or more non-target amino acids for labeling a protein standard, the reactivities of the groups present on amino acid side chains are taken into account. Preferably, conjugation to form a covalent bond consists of simply mixing the reactive compounds of the present invention in a suitable solvent in which both the reactive compound and the substance to be conjugated are soluble. As used herein, the term "protein" encompasses peptides. The method can use point-to point calibration or can compare migration distances by generating a curve based on migration distance versus molecular weight (or log of molecular weight), for example using the least squares method. The dye was purified by reverse phase chromatography using either methanol or acetonitrile as the eluant. The sequence of the insert was not directly determined. The gels were run at 200 V until the dye front reached the bottom of the gel (6. All of the labeled molecular weight marker proteins having molecular weights of 10 kDa or greater migrated within 4. In certain embodiments, a labeling compound conjugated to a first amino acid is a dye.

In some preferred embodiments, the set of pre-labeled protein standards comprises two or more labeled proteins that comprise two or more copies of a sequence derived from a naturally-occurring protein, in which the two or more labeled proteins lack lysine residues and are labeled on at least one cysteine residue. The insulin-b chain has theoretical absorbance of 0. A pre-labeled standard set of the invention can include at least 6 proteins comprising at least four different dyes having different colors having a molecular weight of at least 20 kDa to less than 100 kDa, in which the width of the bands visible to the naked eye of the electrophoresed proteins differ by less than 15%. 0 (the pH of the aqueous dye solution was increased before loading onto the column to avoid breaking the silane bonds of silica-based C-18 sorbents). Apply more for thicker (> 1. For example, where lysine is a target amino acid to be conjugated with a dye, histidine and tryptophan, which are less reactive than lysine and cysteine but nonetheless can react with amino-reactive groups of labeling compounds, can optionally be considered non-target amino acids in addition to cysteine. Where a pre-labeled protein standard set includes two or more, three or more, four or more, or five or more labeled proteins, a pre-labeled protein standard can include different proteins that are labeled with two or more, three or more, four or more, or five or more different dyes. The purified b-chain was precipitated with addition of 60% TCA to a final concentration of 20%. Infect Genet Evol 85:104418 (2020). Synthesis of 50 kd PCR Inserts (1314 bp). However, we are committed to improving your shopping experience. 20×NPS and 5052 solutions are filter sterilized using micron filters. )